| Class | Description |
|---|---|
| GenerateSpotsMinimalPerfectHashCLI |
Get in input a file containing the spots (one per line) generate the minimal
perfect hash for each spot and store in
${ram.spot.perfect.hash}. |
| IndexOffsetsUsingEliasFanoCLI |
Encodes the offsets file with elias fano
|
| IndexSpotFileAndGenerateOffsetsCLI |
Get the file containing the spots (sorted by minimal perfect hash)
and generate the compressed spot file, and an offset file containing
for each spot the position in the compressed spot file, containing
the spot data
|
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