it.cnr.isti.hpc.dexter.spot

Class SpotMatchList

java.lang.Object

java.util.AbstractCollection<E>

java.util.AbstractList<E>

java.util.ArrayList<SpotMatch>

it.cnr.isti.hpc.dexter.spot.SpotMatchList

All Implemented Interfaces:

Serializable, Cloneable, Iterable<SpotMatch>, Collection<SpotMatch>, List<SpotMatch>, RandomAccess

public class SpotMatchList
extends ArrayList<SpotMatch>

Represents a list of SpotMatch

Author:

Diego Ceccarelli, diego.ceccarelli@isti.cnr.it created on 03/ago/2012

See Also:

Serialized Form

Field Summary

Fields inherited from class java.util.AbstractList

modCount

Constructor Summary

Constructors

Constructor and Description
SpotMatchList()

Method Summary

Methods

Modifier and Type	Method and Description
boolean	add(SpotMatch m)
EntityMatchList	getEntities()
int	index(Spot s)
void	normalizeSpotProbabilities()
void	sortByProbability()
String	toString()

Methods inherited from class java.util.ArrayList

add, addAll, addAll, clear, clone, contains, ensureCapacity, get, indexOf, isEmpty, iterator, lastIndexOf, listIterator, listIterator, remove, remove, removeAll, removeRange, retainAll, set, size, subList, toArray, toArray, trimToSize

Methods inherited from class java.util.AbstractList

equals, hashCode

Methods inherited from class java.util.AbstractCollection

containsAll

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.util.List

containsAll, equals, hashCode

Constructor Detail

SpotMatchList

public SpotMatchList()

Method Detail

add

public boolean add(SpotMatch m)

Specified by:

add in interface Collection<SpotMatch>

Specified by:

add in interface List<SpotMatch>

Overrides:

add in class ArrayList<SpotMatch>

normalizeSpotProbabilities

public void normalizeSpotProbabilities()

index

public int index(Spot s)

getEntities

public EntityMatchList getEntities()

toString

public String toString()

Overrides:

toString in class AbstractCollection<SpotMatch>

sortByProbability

public void sortByProbability()